diff --git a/Source/Core/VideoCommon/GraphicsModSystem/Config/GraphicsMod.cpp b/Source/Core/VideoCommon/GraphicsModSystem/Config/GraphicsMod.cpp
index b04190ad67..6a62f5768d 100644
--- a/Source/Core/VideoCommon/GraphicsModSystem/Config/GraphicsMod.cpp
+++ b/Source/Core/VideoCommon/GraphicsModSystem/Config/GraphicsMod.cpp
@@ -112,6 +112,42 @@ std::string GraphicsModConfig::GetAbsolutePath() const
   }
 }
 
+void GraphicsModConfig::SerializeToConfig(picojson::object& json_obj) const
+{
+  picojson::object serialized_metadata;
+  serialized_metadata["title"] = picojson::value{m_title};
+  serialized_metadata["author"] = picojson::value{m_author};
+  serialized_metadata["description"] = picojson::value{m_description};
+  json_obj["meta"] = picojson::value{serialized_metadata};
+
+  picojson::array serialized_groups;
+  for (const auto& group : m_groups)
+  {
+    picojson::object serialized_group;
+    group.SerializeToConfig(serialized_group);
+    serialized_groups.push_back(picojson::value{serialized_group});
+  }
+  json_obj["groups"] = picojson::value{serialized_groups};
+
+  picojson::array serialized_features;
+  for (const auto& feature : m_features)
+  {
+    picojson::object serialized_feature;
+    feature.SerializeToConfig(serialized_feature);
+    serialized_features.push_back(picojson::value{serialized_feature});
+  }
+  json_obj["features"] = picojson::value{serialized_features};
+
+  picojson::array serialized_assets;
+  for (const auto& asset : m_assets)
+  {
+    picojson::object serialized_asset;
+    asset.SerializeToConfig(serialized_asset);
+    serialized_assets.push_back(picojson::value{serialized_asset});
+  }
+  json_obj["assets"] = picojson::value{serialized_assets};
+}
+
 bool GraphicsModConfig::DeserializeFromConfig(const picojson::value& value)
 {
   const auto& meta = value.get("meta");
diff --git a/Source/Core/VideoCommon/GraphicsModSystem/Config/GraphicsMod.h b/Source/Core/VideoCommon/GraphicsModSystem/Config/GraphicsMod.h
index 953af6201b..fd35b963dd 100644
--- a/Source/Core/VideoCommon/GraphicsModSystem/Config/GraphicsMod.h
+++ b/Source/Core/VideoCommon/GraphicsModSystem/Config/GraphicsMod.h
@@ -38,6 +38,7 @@ struct GraphicsModConfig
 
   std::string GetAbsolutePath() const;
 
+  void SerializeToConfig(picojson::object& json_obj) const;
   bool DeserializeFromConfig(const picojson::value& value);
 
   void SerializeToProfile(picojson::object* value) const;
diff --git a/Source/Core/VideoCommon/GraphicsModSystem/Config/GraphicsModAsset.cpp b/Source/Core/VideoCommon/GraphicsModSystem/Config/GraphicsModAsset.cpp
index 5b3141a283..4b51c1c367 100644
--- a/Source/Core/VideoCommon/GraphicsModSystem/Config/GraphicsModAsset.cpp
+++ b/Source/Core/VideoCommon/GraphicsModSystem/Config/GraphicsModAsset.cpp
@@ -4,6 +4,19 @@
 #include "VideoCommon/GraphicsModSystem/Config/GraphicsModAsset.h"
 
 #include "Common/Logging/Log.h"
+#include "Common/StringUtil.h"
+
+void GraphicsModAssetConfig::SerializeToConfig(picojson::object& json_obj) const
+{
+  json_obj["name"] = picojson::value{m_asset_id};
+
+  picojson::object serialized_data;
+  for (const auto& [name, path] : m_map)
+  {
+    serialized_data[name] = picojson::value{PathToString(path)};
+  }
+  json_obj["data"] = picojson::value{serialized_data};
+}
 
 bool GraphicsModAssetConfig::DeserializeFromConfig(const picojson::object& obj)
 {
@@ -19,13 +32,13 @@ bool GraphicsModAssetConfig::DeserializeFromConfig(const picojson::object& obj)
                          "that is not a string");
     return false;
   }
-  m_name = name_iter->second.to_str();
+  m_asset_id = name_iter->second.to_str();
 
   auto data_iter = obj.find("data");
   if (data_iter == obj.end())
   {
     ERROR_LOG_FMT(VIDEO, "Failed to load mod configuration file, specified asset '{}' has no data",
-                  m_name);
+                  m_asset_id);
     return false;
   }
   if (!data_iter->second.is<picojson::object>())
@@ -33,7 +46,7 @@ bool GraphicsModAssetConfig::DeserializeFromConfig(const picojson::object& obj)
     ERROR_LOG_FMT(VIDEO,
                   "Failed to load mod configuration file, specified asset '{}' has data "
                   "that is not an object",
-                  m_name);
+                  m_asset_id);
     return false;
   }
   for (const auto& [key, value] : data_iter->second.get<picojson::object>())
@@ -43,7 +56,7 @@ bool GraphicsModAssetConfig::DeserializeFromConfig(const picojson::object& obj)
       ERROR_LOG_FMT(VIDEO,
                     "Failed to load mod configuration file, specified asset '{}' has data "
                     "with a value for key '{}' that is not a string",
-                    m_name, key);
+                    m_asset_id, key);
       return false;
     }
     m_map[key] = value.to_str();
diff --git a/Source/Core/VideoCommon/GraphicsModSystem/Config/GraphicsModAsset.h b/Source/Core/VideoCommon/GraphicsModSystem/Config/GraphicsModAsset.h
index b38ba792cc..53d8d71892 100644
--- a/Source/Core/VideoCommon/GraphicsModSystem/Config/GraphicsModAsset.h
+++ b/Source/Core/VideoCommon/GraphicsModSystem/Config/GraphicsModAsset.h
@@ -11,8 +11,9 @@
 
 struct GraphicsModAssetConfig
 {
-  std::string m_name;
+  VideoCommon::CustomAssetLibrary::AssetID m_asset_id;
   VideoCommon::DirectFilesystemAssetLibrary::AssetMap m_map;
 
+  void SerializeToConfig(picojson::object& json_obj) const;
   bool DeserializeFromConfig(const picojson::object& obj);
 };
diff --git a/Source/Core/VideoCommon/GraphicsModSystem/Config/GraphicsModFeature.cpp b/Source/Core/VideoCommon/GraphicsModSystem/Config/GraphicsModFeature.cpp
index 3fa75eceba..cc889f70cb 100644
--- a/Source/Core/VideoCommon/GraphicsModSystem/Config/GraphicsModFeature.cpp
+++ b/Source/Core/VideoCommon/GraphicsModSystem/Config/GraphicsModFeature.cpp
@@ -5,6 +5,13 @@
 
 #include "Common/Logging/Log.h"
 
+void GraphicsModFeatureConfig::SerializeToConfig(picojson::object& json_obj) const
+{
+  json_obj["group"] = picojson::value{m_group};
+  json_obj["action"] = picojson::value{m_action};
+  json_obj["action_data"] = m_action_data;
+}
+
 bool GraphicsModFeatureConfig::DeserializeFromConfig(const picojson::object& obj)
 {
   if (auto group_iter = obj.find("group"); group_iter != obj.end())
diff --git a/Source/Core/VideoCommon/GraphicsModSystem/Config/GraphicsModFeature.h b/Source/Core/VideoCommon/GraphicsModSystem/Config/GraphicsModFeature.h
index af71bf35a7..5204eaef57 100644
--- a/Source/Core/VideoCommon/GraphicsModSystem/Config/GraphicsModFeature.h
+++ b/Source/Core/VideoCommon/GraphicsModSystem/Config/GraphicsModFeature.h
@@ -13,6 +13,7 @@ struct GraphicsModFeatureConfig
   std::string m_action;
   picojson::value m_action_data;
 
+  void SerializeToConfig(picojson::object& json_obj) const;
   bool DeserializeFromConfig(const picojson::object& value);
 
   void SerializeToProfile(picojson::object* value) const;
diff --git a/Source/Core/VideoCommon/GraphicsModSystem/Config/GraphicsTarget.cpp b/Source/Core/VideoCommon/GraphicsModSystem/Config/GraphicsTarget.cpp
index 374b138571..575a318484 100644
--- a/Source/Core/VideoCommon/GraphicsModSystem/Config/GraphicsTarget.cpp
+++ b/Source/Core/VideoCommon/GraphicsModSystem/Config/GraphicsTarget.cpp
@@ -5,6 +5,7 @@
 
 #include "Common/Logging/Log.h"
 #include "Common/StringUtil.h"
+#include "Common/VariantUtil.h"
 #include "VideoCommon/TextureCacheBase.h"
 
 namespace
@@ -152,6 +153,53 @@ std::optional<std::string> ExtractTextureFilenameForConfig(const picojson::objec
 }
 }  // namespace
 
+void SerializeTargetToConfig(picojson::object& json_obj, const GraphicsTargetConfig& target)
+{
+  std::visit(
+      overloaded{
+          [&](const DrawStartedTextureTarget& the_target) {
+            json_obj["type"] = picojson::value{"draw_started"};
+            json_obj["texture_filename"] = picojson::value{the_target.m_texture_info_string};
+          },
+          [&](const LoadTextureTarget& the_target) {
+            json_obj["type"] = picojson::value{"load_texture"};
+            json_obj["texture_filename"] = picojson::value{the_target.m_texture_info_string};
+          },
+          [&](const CreateTextureTarget& the_target) {
+            json_obj["type"] = picojson::value{"create_texture"};
+            json_obj["texture_filename"] = picojson::value{the_target.m_texture_info_string};
+          },
+          [&](const EFBTarget& the_target) {
+            json_obj["type"] = picojson::value{"efb"};
+            json_obj["texture_filename"] = picojson::value{
+                fmt::format("{}_{}x{}_{}", EFB_DUMP_PREFIX, the_target.m_width, the_target.m_height,
+                            static_cast<int>(the_target.m_texture_format))};
+          },
+          [&](const XFBTarget& the_target) {
+            json_obj["type"] = picojson::value{"xfb"};
+            json_obj["texture_filename"] = picojson::value{
+                fmt::format("{}_{}x{}_{}", XFB_DUMP_PREFIX, the_target.m_width, the_target.m_height,
+                            static_cast<int>(the_target.m_texture_format))};
+          },
+          [&](const ProjectionTarget& the_target) {
+            json_obj["type"] = picojson::value{"projection"};
+            if (the_target.m_projection_type == ProjectionType::Orthographic)
+            {
+              json_obj["type"] = picojson::value{"2d"};
+            }
+            else
+            {
+              json_obj["type"] = picojson::value{"3d"};
+            }
+            if (the_target.m_texture_info_string)
+            {
+              json_obj["texture_filename"] = picojson::value{*the_target.m_texture_info_string};
+            }
+          },
+      },
+      target);
+}
+
 std::optional<GraphicsTargetConfig> DeserializeTargetFromConfig(const picojson::object& obj)
 {
   const auto type_iter = obj.find("type");
diff --git a/Source/Core/VideoCommon/GraphicsModSystem/Config/GraphicsTarget.h b/Source/Core/VideoCommon/GraphicsModSystem/Config/GraphicsTarget.h
index bde445258c..740da00727 100644
--- a/Source/Core/VideoCommon/GraphicsModSystem/Config/GraphicsTarget.h
+++ b/Source/Core/VideoCommon/GraphicsModSystem/Config/GraphicsTarget.h
@@ -55,6 +55,7 @@ using GraphicsTargetConfig =
     std::variant<DrawStartedTextureTarget, LoadTextureTarget, CreateTextureTarget, EFBTarget,
                  XFBTarget, ProjectionTarget>;
 
+void SerializeTargetToConfig(picojson::object& json_obj, const GraphicsTargetConfig& target);
 std::optional<GraphicsTargetConfig> DeserializeTargetFromConfig(const picojson::object& obj);
 
 void SerializeTargetToProfile(picojson::object* obj, const GraphicsTargetConfig& target);
diff --git a/Source/Core/VideoCommon/GraphicsModSystem/Config/GraphicsTargetGroup.cpp b/Source/Core/VideoCommon/GraphicsModSystem/Config/GraphicsTargetGroup.cpp
index 753f304cb5..f02a047339 100644
--- a/Source/Core/VideoCommon/GraphicsModSystem/Config/GraphicsTargetGroup.cpp
+++ b/Source/Core/VideoCommon/GraphicsModSystem/Config/GraphicsTargetGroup.cpp
@@ -5,6 +5,19 @@
 
 #include "Common/Logging/Log.h"
 
+void GraphicsTargetGroupConfig::SerializeToConfig(picojson::object& json_obj) const
+{
+  picojson::array serialized_targets;
+  for (const auto& target : m_targets)
+  {
+    picojson::object serialized_target;
+    SerializeTargetToConfig(serialized_target, target);
+    serialized_targets.push_back(picojson::value{serialized_target});
+  }
+  json_obj["targets"] = picojson::value{serialized_targets};
+  json_obj["name"] = picojson::value{m_name};
+}
+
 bool GraphicsTargetGroupConfig::DeserializeFromConfig(const picojson::object& obj)
 {
   if (auto name_iter = obj.find("name"); name_iter != obj.end())
diff --git a/Source/Core/VideoCommon/GraphicsModSystem/Config/GraphicsTargetGroup.h b/Source/Core/VideoCommon/GraphicsModSystem/Config/GraphicsTargetGroup.h
index 2db2517175..d0034ef30b 100644
--- a/Source/Core/VideoCommon/GraphicsModSystem/Config/GraphicsTargetGroup.h
+++ b/Source/Core/VideoCommon/GraphicsModSystem/Config/GraphicsTargetGroup.h
@@ -15,6 +15,7 @@ struct GraphicsTargetGroupConfig
   std::string m_name;
   std::vector<GraphicsTargetConfig> m_targets;
 
+  void SerializeToConfig(picojson::object& json_obj) const;
   bool DeserializeFromConfig(const picojson::object& obj);
 
   void SerializeToProfile(picojson::object* obj) const;
diff --git a/Source/Core/VideoCommon/GraphicsModSystem/Runtime/GraphicsModManager.cpp b/Source/Core/VideoCommon/GraphicsModSystem/Runtime/GraphicsModManager.cpp
index 0d2f0fe347..01e7a07033 100644
--- a/Source/Core/VideoCommon/GraphicsModSystem/Runtime/GraphicsModManager.cpp
+++ b/Source/Core/VideoCommon/GraphicsModSystem/Runtime/GraphicsModManager.cpp
@@ -225,7 +225,7 @@ void GraphicsModManager::Load(const GraphicsModGroupConfig& config)
           WARN_LOG_FMT(VIDEO,
                        "Specified graphics mod asset '{}' for mod '{}' has an absolute path, you "
                        "shouldn't release this to users.",
-                       asset.m_name, mod.m_title);
+                       asset.m_asset_id, mod.m_title);
         }
         else
         {
@@ -233,7 +233,7 @@ void GraphicsModManager::Load(const GraphicsModGroupConfig& config)
         }
       }
 
-      filesystem_library->SetAssetIDMapData(asset.m_name, std::move(asset_map));
+      filesystem_library->SetAssetIDMapData(asset.m_asset_id, std::move(asset_map));
     }
   }